Index

A

addstep() (hori.pathway.Pathway method) AdsorbateThermodynamics (class in hori.thermo)

atomsfromlist() (in module hori.io)

C

calculate_Gs() (hori.pathway.Pathway method) calculate_reference_energy() (in module hori.common) calculate_rxn_deltaG() (in module hori.pathway)

connect() (hori.plots.PlotStates method) countatoms() (in module hori.common) create_full_pathway() (in module hori.common)

E

electronicenergy() (in module hori.io)

F

find_limiting_potential() (hori.pathway.Pathway method)

G

gas_chemical_potential() (in module hori.thermo) gasdata() (in module hori.io) GasThermodynamics (class in hori.thermo)

genericvibrations() (in module hori.io) get_directory() (in module hori.io)

H

hbond_dict() (in module hori.common) hbond_dict_none() (in module hori.common) hori (module) hori.common (module)

hori.io (module) hori.pathway (module) hori.plots (module) hori.thermo (module)

I

ignoreimaginaryvibrations() (in module hori.io)

P

Pathway (class in hori.pathway) plotstate() (hori.plots.PlotStates method) PlotStates (class in hori.plots)

print_thermodynamic_contributions() (hori.thermo.AdsorbateThermodynamics method) (hori.thermo.GasThermodynamics method) ProtonElectronThermodynamics (class in hori.thermo)

R

recalculate() (hori.thermo.AdsorbateThermodynamics method)

reference_energies (in module hori.common)

S

scatter_plot_from_dict() (in module hori.plots) set_all_fugacities() (hori.thermo.GasThermodynamics method) set_all_temperatures() (hori.thermo.GasThermodynamics method) set_directory() (in module hori.io) set_electronic_energy() (hori.thermo.AdsorbateThermodynamics method) set_energies_by_metal() (hori.thermo.AdsorbateThermodynamics method) set_gas_fugacity() (hori.thermo.GasThermodynamics method)

set_gas_temperature() (hori.thermo.GasThermodynamics method) set_surface() (hori.thermo.AdsorbateThermodynamics method) set_temperature() (hori.thermo.AdsorbateThermodynamics method) (hori.thermo.ProtonElectronThermodynamics method) set_voltage() (hori.thermo.ProtonElectronThermodynamics method) specificvibrations() (in module hori.io) step2string() (in module hori.pathway)